Gut Microbiome & Medicines: The Hidden Two-Way Conversation
by Anna Sandhu | May 16, 2025
Reviewed by Dr. Arun, M.Pharm., PGDRA, Ph.D.
This article talks about how the tiny microbes in your gut and the medicines you take are connected in two directions. The medicines can change your gut microbes and the gut microbes can change how medicines work in your body. It’s about a field called pharmacomicrobiomics how drugs and microbes interact.
How medicines affect gut microbes
- Some drugs change the acidity of the stomach, which lets different bacteria live in parts of the gut they normally wouldn’t.
- Some medicines directly impact the growth of certain bacteria.
- Because the gut microbes’ community changes, the gut environment changes that might affect how other medicines work, how much of a drug gets into your body, or how strong side-effects are.
How gut microbes affect medicines
- Break down or change drugs before the drug even reaches the bloodstream. For instance, a drug may become weaker or stronger because of a microbe.
- Affect how much of a drug is absorbed (bioavailability), how active it is, or how toxic it becomes.
- Influence how someone responds to very modern treatments like cancer immunotherapy because the gut microbes affect immune behaviour.
Key Take-aways
- There is a two-way interaction: drugs ↔ gut microbes.
- Many medicines not thought of as “microbe-related” still change the gut microbiome.
- Gut microbes can change how well a medicine works (makes it stronger/weaker) and whether there are side-effects.
- Understanding this interaction can help doctors pick better medicines and perhaps modify the gut microbes to improve treatments.
Final Thoughts
This article reminds us that taking a medicine is not just about the drug and the body — it’s also about the microbes inside your gut. These gut microbes are like hidden helpers or sometimes hidden actors: they change when you take medicine, and they change how medicine behaves. For you, this means that when you’re prescribed something beyond “take the pill” what’s happening in your gut might matter too. In the future, doctors might look at your gut microbes before deciding on a drug or dose. Also, supporting a healthy gut (good diet, low unnecessary medications, etc.) may help your medicines work better. This research marks a step toward more personalised medicine where your gut microbiome becomes part of the treatment plan.
More Information Interaction between drugs and the gut microbiome. DOI: https://doi.org/10.1136/gutjnl-2019-320204